Cloned Hdd, But..., games and app's don't show up Options

[yabba1]

Happy New Year to all!

My first post because I've always found my answers on the forum and never had a problem yet, but could use some help now at a delicate junction.

I have a V1.0 xbox
Excecuter 1 (could be Enigmah, it's been awhile), can't flash the chip either way.
Running Evox 3935.

Just cloned my old WD 120gb Caviar WD1200JB-75CRA0 to SG Barracuda 7200.7 ST3120022A. I've had the WD in for about a year and a half and noticed it getting louder and a bit choppy lately (Halo2 with trainer running). I used to throw alot on and off it so I was concerned about fragmantation.

Had a bud experienced with ghost and cloning drives follow these instructions...
http://www.xbox-scene.com/articles/clone-hdd.php. He did everything correctly as far as I know.

Evox boot's up no problem on the new SG clone, but I cannot see any games or app's in the games & app's directories. When I check the drive space in the evox settings it reports the same space available before cloning, so I believe everything cloned over, I just can't see it.

I've changed the IDE cable to Master and Cable select and get the same thing. I put the jumper on the third HD position and got an error 7. I haven't tried the fourth position which limits the drive to 32gb because I'm concerned it might mess up the HD.

I can FTP to it and see the contents of C:, all other directories appear empty except the cache on E: and X: I cleared these per some related posts, but still no dice on the game/app' directory contents after rebooting. I have not tried to FTP any files to it yet.

I believe my problem is related to the hdd's state of "lockedness". In the evox settings/info under Hard disk/security, the SG says "Lock disabled" where as it displays as "N/A" when the WD is installed.

Can someone point me in the right direction for what my next step should be here?
Very much appreciated!