yes thompsons are a headache.
Just keep putting ejecting and closing the drive itll read it sooner or later.
Even if it takes 30 mins of ejecting and loading it will read it.
lol.
My xbox I recently got from a pawn shop came with a thompson drive and its a version 1.0 console.
Kinda nice and not.
I'm gonna make it strictly a media box for streaming videos from the computer and the internet in the end. Probaly make it as small as possible. But hey I'm not here for making a gonna thread, these are all thoughts in my head.
But yeah when I modded my xbox using my spider solderless chip to gain access to install the soft mod installer. It was tough, I had the instability of the dvd-drive, and the instability of getting the spider chip working. Took me 4-6 hours in the end and had to install the softmod manually from reading the install script of the softmod installer.

. But hey it worked.
Never give up, no matter how long it takes and even if it seems you dont have the tools just get it done.